Home > Portfólio > Publicações

 

2016

  • Aires T, Serrão EA, Engelen AH. Host and Environmental Specificity in Bacterial Communities Associated to Two Highly Invasive Marine Species (Genus Asparagopsis). Front Microbiol. 2016;7:559. doi:10.3389/fmicb.2016.00559.
  • Alves M, Pereira A, Matos P, et al. Bacterial community associated to the pine wilt disease insect vectors Monochamus galloprovincialis and Monochamus alternatus. Sci Rep. 2016;6:23908. doi:10.1038/srep23908.
  • Cleary DFR, Becking LE, De Voogd NJ, et al. Variation in the diversity and composition of benthic taxa as a function of distance offshore, depth and exposure in the Spermonde Archipelago, Indonesia. Estuar Coast Shelf Sci. 2005;65(3):557-570. doi:10.1016/j.ecss.2005.06.025.
  • Cleary DFR, Becking LE, Polónia ARM, Freitas RM, Gomes NCM. Jellyfish-associated bacterial communities and bacterioplankton in Indonesian Marine lakes. FEMS Microbiol Ecol. 2016:fiw064. doi:10.1093/femsec/fiw064.
  • Cleary DFR, Polónia ARM, Sousa AI, Lillebø AI, Queiroga H, Gomes NCM. Temporal dynamics of sediment bacterial communities in monospecific stands of Juncus maritimus and Spartina maritima. Plant Biol (Stuttg). 2016. doi:10.1111/plb.12459.
  • Coelho FJRC, Cleary DFR, Costa R, et al. Multi-taxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution. Mol Ecol. 2016. doi:10.1111/mec.13779.
  • Domingos S, Fino J, Cardoso V, et al. Shared and divergent pathways for flower abscission are triggered by gibberellic acid and carbon starvation in seedless Vitis vinifera L. BMC Plant Biol. 2016;16(1):38. doi:10.1186/s12870-016-0722-7.
  • Domingos S, Fino J, Paulo OS, Oliveira CM, Goulao LF. Molecular candidates for early-stage flower-to-fruit transition in stenospermocarpic table grape (Vitis vinifera L.) inflorescences ascribed by differential transcriptome and metabolome profiles. Plant Sci. 2016;244:40-56. doi:10.1016/j.plantsci.2015.12.009.
  • Duarte S, Cássio F, Ferreira V, Canhoto C, Pascoal C. Seasonal Variability May Affect Microbial Decomposers and Leaf Decomposition More Than Warming in Streams. Microb Ecol. 2016. doi:10.1007/s00248-016-0780-2.
  • Eberlein C, Heuer H, Vidal S, Westphal A. Microbial communities in Globodera pallida females raised in potato monoculture soil. Phytopathology. 2016. doi:10.1094/PHYTO-07-15-0180-R.
  • Jones-Dias D, Clemente L, Egas C, et al. Salmonella Enteritidis Isolate Harboring Multiple Efflux Pumps and Pathogenicity Factors, Shows Absence of O Antigen Polymerase Gene. Front Microbiol. 2016;7:1130. doi:10.3389/fmicb.2016.01130.
  • Paulino C, Neiva J, Coelho NC, et al. Characterization of 12 polymorphic microsatellite markers in the sugar kelp Saccharina latissima. J Appl Phycol. 2016. doi:10.1007/s10811-016-0811-x.
  • Silva MEF, Lopes AR, Cunha-Queda AC, Nunes OC. Comparison of the bacterial composition of two commercial composts with different physicochemical, stability and maturity properties. Waste Manag. 2016;50:20-30. doi:10.1016/j.wasman.2016.02.023.
  • Simões MJ, Carmona S, Roberts R, et al. CYP1B1 mutational screening in a Portuguese cohort of primary congenital glaucoma patients. Ophthalmic Genet. 2016;7:1-3. doi:10.1080/13816810.2016.1188121.
  • Wolters B, Ding G-C, Kreuzig R, Smalla K. Full-scale mesophilic biogas plants using manure as C-source: bacterial community shifts along the process cause changes in the abundance of resistance genes and mobile genetic elements. FEMS Microbiol Ecol. 2016;92(2). doi:10.1093/femsec/fiv163.

 

 2015 

  • Aires T, Moalic Y, Serrao EA, Arnaud-Haond S. Hologenome theory supported by cooccurrence networks of species-specific bacterial communities in siphonous algae (Caulerpa). FEMS Microbiol Ecol. 2015;91(7):fiv067. doi:10.1093/femsec/fiv067.
  • Baptista P, Reis F, Pereira E, et al. Soil DNA pyrosequencing and fruitbody surveys reveal contrasting diversity for various fungal ecological guilds in chestnut orchards. Environ Microbiol Rep. 2015. doi:10.1111/1758-2229.12336.
  • Barros I, Divya B, Martins I, Vandeperre F, Santos RS, Bettencourt R. Post-capture immune gene expression studies in the deep-sea hydrothermal vent mussel Bathymodiolus azoricus acclimatized to atmospheric pressure. Fish Shellfish Immunol. 2015;42(1):159-70. doi:10.1016/j.fsi.2014.10.018.
  • Buscardo E, Rodríguez-Echeverría S, Freitas H, De Angelis P, Pereira JS, Muller LAH. Contrasting soil fungal communities in Mediterranean pine forests subjected to different wildfire frequencies. Fungal Divers. 2014;70(1):85-99. doi:10.1007/s13225-014-0294-5.
  • Cardoso JMS, Fonseca L, Gomes P, Egas C, Abrantes I. Molecular characterization and functional analysis of a calponin gene from the pinewood nematode. Smith JA, ed. For Pathol. 2015;45(6):467-473. doi:10.1111/efp.12196.
  • Cerqueira T, Pinho D, Egas C, et al. Microbial diversity in deep-sea sediments from the Menez Gwen hydrothermal vent system of the Mid-Atlantic Ridge. Mar Genomics. 2015;24 Pt 3:343-55. doi:10.1016/j.margen.2015.09.001.
  • Cleary DFR, Becking LE, Polónia ARM, Freitas RM, Gomes NCM. Composition and predicted functional ecology of mussel-associated bacteria in Indonesian marine lakes. Antonie Van Leeuwenhoek. 2015;107(3):821-34. doi:10.1007/s10482-014-0375-1.
  • Cleary DFR, de Voogd NJ, Polónia ARM, Freitas R, Gomes NCM. Composition and Predictive Functional Analysis of Bacterial Communities in Seawater, Sediment and Sponges in the Spermonde Archipelago, Indonesia. Microb Ecol. 2015;70(4):889-903. doi:10.1007/s00248-015-0632-5.
  • Coelho FJRC, Cleary DFR, Rocha RJM, et al. Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities. Glob Chang Biol. 2015;21(5):1871-86. doi:10.1111/gcb.12801.
  • Cruz A, Rodrigues R, Pinheiro M, Mendo S. Transcriptomes analysis of Aeromonas molluscorum Av27 cells exposed to tributyltin (TBT): Unravelling the effects from the molecular level to the organism. Mar Environ Res. 2015;109:132-9. doi:10.1016/j.marenvres.2015.06.017.
  • de Voogd NJ, Cleary DFR, Polónia ARM, Gomes NCM. Bacterial community composition and predicted functional ecology of sponges, sediment and seawater from the thousand islands reef complex, West Java, Indonesia. FEMS Microbiol Ecol. 2015;91(4):fiv019. doi:10.1093/femsec/fiv019.
  • DUARTE A, MALEITA C, ABRANTES I, CURTIS R. Tomato root exudates induce transcriptional changes of  Meloidogyne hispanica  genes. Phytopathol Mediterr. 2015;54(1):104-108. doi:10.14601/Phytopathol_Mediterr-14595.
  • Duarte S, Bärlocher F, Trabulo J, Cássio F, Pascoal C. Stream-dwelling fungal decomposer communities along a gradient of eutrophication unraveled by 454 pyrosequencing. Fungal Divers. 2014;70(1):127-148. doi:10.1007/s13225-014-0300-y.
  • Fernandes I, Pereira A, Trabulo J, Pascoal C, Cássio F, Duarte S. Microscopy- or DNA-based analyses: Which methodology gives a truer picture of stream-dwelling decomposer fungal diversity? Fungal Ecol. 2015;18:130-134. doi:10.1016/j.funeco.2015.08.005.
  • Landi M, Araújo A, Lobo J, et al. Ancient DNA in Archaeological Garum Remains from the South of Portugal. In: Oliveira C, Morais R, Cerdán ÁM, eds. Chromatography and DNA analysis in archaeology. Esposende: Municipio de Esposende; 2015.
  • Martins MJF, Lago-Leston A, Anjos A, et al. A transcriptome resource for Antarctic krill (Euphausia superba Dana) exposed to short-term stress. Mar Genomics. 2015;23:45-7. doi:10.1016/j.margen.2015.04.008.
  • Martins P, Navarro RVV, Coelho FJRC, Gomes NCM. Development of a molecular methodology for fast detection of Photobacterium damselae subspecies in water samples. Aquaculture. 2015;435:137-142. doi:10.1016/j.aquaculture.2014.09.028.
  • Miguel A, de Vega-Bartol J, Marum L, et al. Characterization of the cork oak transcriptome dynamics during acorn development. BMC Plant Biol. 2015;15(1):158. doi:10.1186/s12870-015-0534-1.
  • Oliveira J, Negrão L, Fineza I, et al. New splicing mutation in the choline kinase beta (CHKB) gene causing a muscular dystrophy detected by whole-exome sequencing. J Hum Genet. 2015;60(6):305-12. doi:10.1038/jhg.2015.20.
  • Pearson GA, Lago-Leston A, Cánovas F, et al. Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula. ISME J. 2015;9(10):2275-89. doi:10.1038/ismej.2015.40.
  • Pegoraro N, Calado R, Duarte LN, et al. Molecular analysis of skin bacterial assemblages from codfish and pollock after dry-salted fish production. J Food Prot. 2015;78(5):983-9. doi:10.4315/0362-028X.JFP-14-390.
  • Pereira R, Oliveira J, Ferraz L, Barros A, Santos R, Sousa M. Mutation analysis in patients with total sperm immotility. J Assist Reprod Genet. 2015;32(6):893-902. doi:10.1007/s10815-015-0474-6.
  • Pinto C, Pinho D, Cardoso R, et al. Wine fermentation microbiome: a landscape from different Portuguese wine appellations. Front Microbiol. 2015;6:905. doi:10.3389/fmicb.2015.00905.
  • Polónia ARM, Cleary DFR, Freitas R, de Voogd NJ, Gomes NCM. The putative functional ecology and distribution of archaeal communities in sponges, sediment and seawater in a coral reef environment. Mol Ecol. 2015;24(2):409-23. doi:10.1111/mec.13024.
  • Ramos AA, Weydmann A, Cox CJ, Canário AVM, Serrão EA, Pearson GA. A transcriptome resource for the copepod Calanus glacialis across a range of culture temperatures. Mar Genomics. 2015;23:27-9. doi:10.1016/j.margen.2015.03.014.
  • Riquelme C, Câmara S, Dapkevicius M de LNE, et al. Characterization of the bacterial biodiversity in Pico cheese (an artisanal Azorean food). Int J Food Microbiol. 2015;192:86-94. doi:10.1016/j.ijfoodmicro.2014.09.031.
  • Rosado T, Mirão J, Candeias A, Caldeira AT. Characterizing microbial diversity and damage in mural paintings. Microsc Microanal. 2015;21(1):78-83. doi:10.1017/S1431927614013439.
  • Serrazina S, Santos C, Machado H, et al. Castanea root transcriptome in response to Phytophthora cinnamomi challenge. Tree Genet Genomes. 2015;11(1):6. doi:10.1007/s11295-014-0829-7.
  • Vaz-Moreira I, Varela AR, Pereira T V., Fochat RC, Manaia CM. Multidrug Resistance in Quinolone-Resistant Gram-Negative Bacteria Isolated from Hospital Effluent and the Municipal Wastewater Treatment Plant. Microb Drug Resist. 2015:mdr.2015.0118. doi:10.1089/mdr.2015.0118.
  • Yim B, Winkelmann T, Ding G-C, Smalla K. Different bacterial communities in heat and gamma irradiation treated replant disease soils revealed by 16S rRNA gene analysis - contribution to improved aboveground apple plant growth? Front Microbiol. 2015;6:1224. doi:10.3389/fmicb.2015.01224.


2014 

  • M. Adam, A. Westphal, J. Hallmann, and H. Heuer. (2014) Specific Microbial Attachment to Root Knot Nematodes in Suppressive Soil. Appl. Environ. Microbiol. 80:2679-2686. doi:10.1128/AEM.03905-13.
  • A. C. Alves, A. Etxebarria, A. K. Soutar, C. Martin, and M. Bourbon. (2014) Novel functional APOB mutations outside LDL-binding region causing familial hypercholesterolaemia. Hum. Mol. Genet. 23 (7): 1817-1828. DOI:10.1093/hmg/ddt573. 
  • S. Arnaud-Haond, R. Candeias, E. A. Serrão, S. J. L. Teixeira. (2014) Microsatellite markers developed through pyrosequencing allow clonal discrimination in the invasive alga Caulerpa taxifolia. Conservation Genetics Resources 5:667-669. doi:10.1007/s12686-013-9878-8.
  • Bettencourt, R., Rodrigues, M., Barros, I., Cerqueira, T., Freitas, C., Costa, V., Pinheiro, M., Egas, C., Santos, R. S. (2014) Site-related differences in gene expression and bacterial densities in the mussel Bathymodiolus azoricus from the Menez Gwen and Lucky Strike deep-sea hydrothermal vent sites. Fish & Shellfish Immunology. 39:343-353. doi:10.1016/j.fsi.2014.05.024.
  • N. C. Coelho, E. A. Serrão, F. Alberto. (2014) Characterization of fifteen microsatellite markers for the kelp Laminaria ochroleuca and cross species amplification within the genus. Conservation Genet Resour. 6:949-950. doi:10.1007/s12686-014-0249-x.
  • Ding G-C, Radl V, Schloter-Hai B, Jechalke S, Heuer H, Smalla K, Schloter M (2014) Dynamics of Soil Bacterial Communities in Response to Repeated Application of Manure Containing Sulfadiazine. PLoS ONE 9(3): e92958. doi: 10.1371/journal.pone.0092958.
  • Egas, C., Barroso, C., Froufe, H., Pacheco, J., Albuquerque, L., da Costa, M. (2014) Complete genome sequence of the radiation-resistant bacterium Rubrobacter radiotolerans RSPS-4. Standards in Genomic Sciences. 9(3). doi:10.4056/sigs.5661021.
  • Newton C.M. Gomes, Daniel F.R. Cleary, Ana C.C. Pires, Adelaide Almeida, Angela Cunha, Leda C.S. Mendonça-Hagler, Kornelia Smalla. (2014) Assessing variation in bacterial composition between the rhizospheres of two mangrove tree species. Estuarine, Coastal and Shelf Science.139:40-45. doi.org/10.1016/j.ecss.2013.12.022.
  • Pinto C, Pinho D, Sousa S, Pinheiro M, Egas C, et al. (2014) Unravelling the Diversity of Grapevine Microbiome. PLoS ONE 9(1): e85622. doi:10.1371/journal.pone.0085622.
  • Hardoim C, Cúcio ACB, Esteves AIS, Berg G, Xavier JR, Cox CJ and Costa R. Effects of sample handling and cultivation bias on the specificity of bacterial communities in keratose marine sponges Front Microbiol. 2014; 5:611. doi: 10.3389/fmicb.2014.00611.
  • Hardoim, C. C. P. and Costa, R. (2014), Temporal dynamics of prokaryotic communities in the marine sponge Sarcotragus spinosulus. Molecular Ecology, 23: 3097–3112. doi: 10.1111/mec.12789.
  • Lopes, A. R., Manaia, C. M. and Nunes, O. C. (2014) Bacterial community variations in an alfalfa-rice rotation system revealed by 16S rRNA gene 454-pyrosequencing. FEMS Microbiology Ecology, 87: 650–663. doi: 10.1111/1574-6941.12253.
  • J. M. Marques, T. F. da Silva, R. E. Vollu, A. F. Blank, G. Ding, L. Seldin, and K. Smalla. (2014) Plant age and genotype affect the bacterial community composition in the tuber rhizosphere of field-grown sweet potato plants. FEMS Microbiology Ecology. 2014. 88:424–435. doi: 10.1111/1574-6941.12313.
  • F. O. Morais-Silva, A. M. Rezende, C. Pimentel, C. I. Santos, C. Clemente, A. Varela–Raposo, D. M. Resende, S. M. da Silva, L. M. de Oliveira, M. Matos, D. A. Costa, O. Flores, J. C. Ruiz and C. Rodrigues-Pousada. (2014) Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus. MicrobiologyOpen 2014; 3(4): 513–530 doi:10.1002/mbo3.184.
  • V. Oliveira, Newton C.M. Gomes, Daniel F.R. Cleary, A. Almeida, Artur M.S. Silva, Mário M.Q. Simões, H. Silva, A. Cunha. Halophyte plant colonization as a driver of the composition of bacterial communities in salt marshes chronically exposed to oil hydrocarbons. FEMS Microbiology Ecology. 2014, 90 (3) 647-662; DOI:10.1111/1574-6941.12425.
  • J. B. Pereira-Leal, I. A. Abreu, C. S. Alabaça, M. H. Almeida, P. Almeida, T. Almeida, M. I. Amorim, S. Araújo, H. Azevedo, A. Badia, D. Batista, A. Bohn, T. Capote, I. Carrasquinho, I. Chaves, A. C. Coelho, M. M. R. Costa, R. Costa, A. Cravador, C. Egas, C. Faro, A. M. Fortes, A. S. Fortunato, M. J. Gaspar, S. Gonçalves, J. Graça, M. Horta, V. Inácio, J. M. Leitão, T. Lino-Neto, L. Marum, J. Matos, D. Mendonça, A. Miguel, C. M. Miguel, L. Morais-Cecílio, I. Neves, F. Nóbrega, M. M. Oliveira, R. Oliveira, M. S. Pais, J. A. Paiva, O. S. Paulo, M. Pinheiro, J. A. P. Raimundo, J. C. Ramalho, A. I. Ribeiro, T. Ribeiro, M. Rocheta, A. I. Rodrigues, J. C. Rodrigues, N. J. M. Saibo, T. E. Santo, A. M. Santos, P. Sá-Pereira, M. Sebastiana, F. Simões, R. S. Sobral, R. Tavares, R. Teixeira, C. Varela, M. M. Veloso and C. P. P. Ricardo. (2014) A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing. BMC Genomics, 15:371. doi:10.1186/1471-2164-15-371.
  • Rocheta M, Sobral R, Magalhães J, Amorim MI, Ribeiro T, Pinheiro M, Egas C, Morais-Cecílio L, Costa MMR. 2014. Comparative transcriptomic analysis of male and female flowers of monoecious Quercus suber. Frontiers in Plant Science. 5. Doi:10.3389/fpls.2014.00599.      
  • S. Schreiter, G-C. Ding, R. Grosch, S. Kropf, K. Antweiler, K. Smalla. Soil type-dependent effects of a potential biocontrol inoculant on indigenous bacterial communities in the rhizosphere of field-grown lettuce. FEMS Microbiology Ecology. 2014, 90 (3) 718-730; DOI:10.1111/1574-6941.12430.
  • S. Schreiter, G. Ding, H. Heuer, G. Neumann, M. Sandmann, R. Grosch, S. Kropf and K. Smalla. (2014) Effect of the soil type on the microbiome in the rhizosphere of field-grown lettuce. Front Microbiol. 2014; 5:144. doi:10.3389/fmicb.2014.00144.
  • Sebastiana M, Vieira B, Lino-Neto T, Monteiro F, Figueiredo A, et al. (2014) Oak Root Response to Ectomycorrhizal Symbiosis Establishment: RNA-Seq Derived Transcript Identification and Expression Profiling. PLoS ONE 9(5): e98376. doi: 10.1371/journal.pone.0098376.
  • Simoes MJ, Lobo C., Egas C, Nunes S, Carmona S, Costa MA, Duarte T, Ribeiro L, Faro C, Cunha-Vaz J. Genetic variants in ICAM1, PPARGC1A and MTHFR are potentially associated with different phenotypes of diabetic retinopathy. Ophthalmologica 2014. 232(3):156-62. doi: 10.1159/000365229.
  • Sergio Stefanni, Raul Bettencourt, Miguel Pinheiro, Gianluca De Moro, Lucia Bongiorni, and Alberto Pallavicini. 2014. Transcriptome of the Deep-Sea Black Scabbardfish, Aphanopus carbo (Perciformes: Trichiuridae): Tissue-Specific Expression Patterns and Candidate Genes Associated to Depth Adaptation. International Journal of Genomics 2014, Article ID 267482, 21 pages. doi:10.1155/2014/267482.
  • Teixeira, R. T., Fortes, A. M., Pinheiro, C., and Pereira, H. (2014) Comparison of good- and bad-quality cork: application of high-throughput sequencing of phellogenic tissue. J Exp Bot. 2014 Sep;65(17):4887-905. doi: 10.1093/jxb/eru252.
  • A. Weydmann, N. C. Coelho, A. A. Ramos, E. A. Serrão, G. A. Pearson. (2014) Microsatellite markers for the Arctic copepod Calanus glacialis and cross-amplification with C. finmarchicus. Conservation Genet Resour. 6:1003-1005.

2013

  • Abbasi, M., Paquete, L., Liefooghe, A., Pinheiro, M. and Matias P. (2013) Improvements on bicriteria pairwise sequence alignment: algorithms and applications. Bioinformatics 29(8):996-1003 doi:10.1093/bioinformatics/btt098. 
  • Aires, T., Serrão, E. A., Kendrick, G., Duarte, C. M. and Arnaud-Haond, S. (2013). Invasion is a community affair: Clandestine followers in the bacterial community associated to green algae, Caulerpa racemosa, track the invasion source. PloS One, 8(7):e68429. doi:10.1371/journal.pone.0068429.
  • Arnaud-Haond, S., Candeias, R., Serrão, E. A. and Teixeira, S. J. (2013). Microsatellite markers developed through pyrosequencing allow clonal discrimination in the invasive alga Caulerpa taxifoliaConservation Genetics Resources, 5(3):667–669. doi:10.1007/s12686-013-9878-8.
  • Bettencourt, R., Rodrigues, M. I., Barros, I., Cerqueira, T., Freitas, C., Costa, V., Pinheiro, M., Egas, C. and Santos, R. S. (2013). Differential gene expression in the mussel Bathymodiolus azoricus from the Menez Gwen and Lucky Strike deep-sea hydrothermal vent sites. Biogeosciences Discussions, 10(2):2013–2038. doi:10.5194/bgd-10-2013-2013.
  • Carneiro, A. R., Jucá Ramos, R. T., Baraúna, R. A., de Sá, P. H., Marinho Almeida, D., Barbosa, S., Pereira A, Alves, A., Egas, C., Correia, A., Henriques, I. and Silva, A. (2013). Draft Genome Sequence of Serratia fonticola LMG 7882T Isolated from Freshwater. Genome Announcements, 1(6). doi:10.1128/genomeA.00971-13.
  • Cleary, D. F. R., Becking, L. E., de Voogd, N. J., Pires, A. C. C., Polónia, A. R. M., Egas, C. and Gomes, N. C. M. (2013). Habitat- and host-related variation in sponge bacterial symbiont communities in Indonesian waters. FEMS Microbiology Ecology, 85(3):465–82. doi:10.1111/1574-6941.12135.
  • Coelho, F.J., Rocha, R.J., Pires, A.C., Ladeiro, B., Castanheira, J.M., Costa, R., Almeida, A., Cunha, A., Lillebø, A.I., Ribeiro, R., Pereir,a R., Lopes, I., Marques, C., Moreira-Santos, M., Calado, R., Cleary, D.F. and Gomes, N.C. (2013). Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities. Global Change Biology, 19(8): 2584–95. doi:10.1111/gcb.12227.
  • Ding, G.-C., Pronk, G. J., Babin, D., Heuer, H., Heister, K., Kögel-Knabner, I. and Smalla, K. (2013). Mineral composition and charcoal determine the bacterial community structure in artificial soils. FEMS Microbiology Ecology, 86(1):15–25. doi:10.1111/1574-6941.12070.
  • Figueiredo, J., Simões, M. J., Gomes, P., Barroso, C., Pinho, D., Conceição, L., Fonseca, L., Abrantes, I., Pinheiro, M. and Egas, C. (2013). Assessment of the Geographic Origins of Pinewood Nematode Isolates via Single Nucleotide Polymorphism in Effector Genes. PloS One, 8(12):e83542. doi:10.1371/journal.pone.0083542.
  • Gomes, N. C. M., Manco, S. C., Pires, A. C. C., Gonçalves, S. F., Calado, R., Cleary, D. F. R. and Loureiro, S. (2013). Richness and composition of sediment bacterial assemblages in an Atlantic port environment. The Science of the Total Environment, 452-453:172–80. doi:10.1016/j.scitotenv.2013.02.017.
  • Henriques, I., Jucá Ramos, R. T., Baraúna, R. A., de Sá, P. H., Marinho Almeida, D., Carneiro, A. R., Barbosa, S., Pereira, A., Alves, A., Saavedra, M.J., Egas, C., Silva, A. and Correia, A. (2013). Draft Genome Sequence of Serratia fonticola UTAD54, a Carbapenem-Resistant Strain Isolated from Drinking Water. Genome Announcements, 1(6). doi:10.1128/genomeA.00970-13.
  • Lopes, A. R., Manaia, C. M. and Nunes, O. C. (2013). Bacterial community variations in an alfalfa-rice rotation system revealed by 16S rRNA gene 454-pyrosequencing. FEMS Microbiology Ecology. doi:10.1111/1574-6941.12253.
  • Martins, P., Cleary, D. F. R., Pires, A. C. C., Rodrigues, A. M., Quintino, V., Calado, R. and Gomes, N. C. M. (2013). Molecular Analysis of Bacterial Communities and Detection of Potential Pathogens in a Recirculating Aquaculture System for Scophthalmus maximus and Solea senegalensis. PloS One, 8(11):e80847. doi:10.1371/journal.pone.0080847.
  • Vaz-Moreira, I., Egas, C., Nunes, O. C. and Manaia, C. M. (2013). Bacterial diversity from the source to the tap: a comparative study based on 16S rRNA gene-DGGE and culture-dependent methods. FEMS Microbiology Ecology, 83(2):361–74. doi:10.1111/1574-6941.12002.
  • Vieira, R., Simões, M. J., Carmona, S., Egas, C., Faro, C. and Figueiredo, A. (2013). Identification of DLEC1 D215N Somatic Mutation in Formalin Fixed Paraffin Embedded Melanoma and Melanocytic Nevi Specimens. Journal of Skin Cancer, ID 469671. doi:10.1155/2013/469671.

2012

  • Aires, Tânia, Marbà, N., Serrão, E. A., Duarte, C. M. and Arnaud-Haond, S. (2012). Selective elimination of chloroplastidial DNA for metagenomics of bacteria associated with the green alga Caulerpa taxofolia (Bryopsidophyceae). Journal of Phycology, 48(2):483–490. doi:10.1111/j.1529-8817.2012.01124.x.
  • Cleary, D. F. R., Smalla, K., Mendonça-Hagler, L. C. S. and Gomes, N. C. M. (2012). Assessment of variation in bacterial composition among microhabitats in a mangrove environment using DGGE fingerprints and barcoded pyrosequencing. PloS One7(1):e29380. doi:10.1371/journal.pone.0029380.
  • Conceição, I. L., Tzortzakakis, E. A., Gomes, P., Abrantes, I. and Cunha, M. J. (2012). Detection of the root-knot nematode Meloidogyne ethiopica in Greece. European Journal of Plant Pathology, 134(3):451–457. doi:10.1007/s10658-012-0027-0.
  • Costa-Matos, L., Batista, P., Monteiro, N., Simões, M., Egas, C., Pereira, J., Pinho, H., Santos, N., Ribeiro, J., Cipriano, MA., Henriques, P., Girão, F., Rodrigues, A. and Carvalho, A. (2012). Liver hepcidin mRNA expression is inappropriately low in alcoholic patients compared with healthy controls. European Journal of Gastroenterology and Hepatology, 24(10):1158–65. doi:10.1097/MEG.0b013e328355cfd0.
  • Ding, G.-C., Heuer, H. and Smalla, K. (2012). Dynamics of bacterial communities in two unpolluted soils after spiking with phenanthrene: soil type specific and common responders. Frontiers in Microbiology3:290. doi:10.3389/fmicb.2012.00290.
  • Egas, C., Pinheiro, M., Gomes, P., Barroso, C. and Bettencourt, R. (2012). The transcriptome of Bathymodiolus azoricus gill reveals expression of genes from endosymbionts and free-living deep-sea bacteria. Marine Drugs, 10(8):1765–83. doi:10.3390/md10081765.
  • Maleita, C. M., Simões, M. J., Egas, C., Curtis, R. H. C. and Abrantes, I. M. (2012). Biometrical, Biochemical, and Molecular Diagnosis of Portuguese Meloidogyne hispanica Isolates. Plant Disease, 96(6):865–874. doi:10.1094/PDIS-09-11-0769-RE.
  • Pires, A. C. C., Cleary, D. F. R., Almeida, A., Cunha, A., Dealtry, S., Mendonça-Hagler, L. C. S., Smalla, K. and Gomes, N. C. M. (2012). Denaturing gradient gel electrophoresis and barcoded pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples. Applied and Environmental Microbiology, 78(16):5520–8. doi:10.1128/AEM.00386-12.
  • Santos, C. S., Pinheiro, M., Silva, A. I., Egas, C. and Vasconcelos, M. W. (2012). Searching for resistance genes to Bursaphelenchus xylophilus using high throughput screening. BMC Genomics, 13(1):599. doi:10.1186/1471-2164-13-599.

2011

  • Gomes, N. C., Cleary, D. F., Calado, R. and Costa, R. (2011). Mangrove bacterial richness. Communicative and Integrative Biology, 4(4):419–23. doi:10.4161/cib.4.4.15253
  • Vaz-Moreira, I., Egas, C., Nunes, O. C. and Manaia, C. M. (2011). Culture-dependent and culture-independent diversity surveys target different bacteria: a case study in a freshwater sample. Antonie van Leeuwenhoek, 100(2):245–57. doi:10.1007/s10482-011-9583-0
  • Velada, I., Capela-Silva, F., Reis, F., Pires, E., Egas, C., Rodrigues-Santos, P. and Barros, M. T. (2011). Expression of genes encoding extracellular matrix macromolecules and metalloproteinases in avian tibial dyschondroplasia. Journal of comparative Pathology, 145(2-3):174–86. doi:10.1016/j.jcpa.2010.12.008.

2010

  • Bettencourt, Raul, Pinheiro, M., Egas, C., Gomes, P., Afonso, M., Shank, T. and Santos, R. S. (2010). High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricusBMC Genomics, 11:559. doi:10.1186/1471-2164-11-559.
  • Gomes, N, Clearly, D., Pinto, F., Egas, C., Almeida, A., Cunha, A., Mendonça-Hagler, L. and Smalla, K. (2010). Taking root: enduring effect of rhizosphere bacterial colonization in mangroves. PloS One, 5(11): e14065. doi:10.1371/journal.pone.0014065.

2009

  • Soares, A. R., Pereira, P. M., Santos, B., Egas, C., Gomes, A.C., Arrais, J., Moura, G.R. and Santos, M.A.S. 2009. Parallel DNA pyrosequencing unveils new zebrafish microRNAs. BMC Genomics 10:195. (BMC Genomics highly accessed paper).
Facebook LinkedIn Twitter © 2017 Genoinseq . mapa do site powered by Ponto.C | webdesign by Walk